Science & Publications

Peer-reviewed research and active collaborations advancing multi-omics precision medicine

Published Research

Nature Neuroscience 2023

Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles

Morton JT, Jin DM, Mills RH, et al.

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Nature Biotechnology 2023

Protein remote homology detection and structural alignment using deep learning

Hamamsy T, Morton JT, Blackwell R, et al.

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Nature Methods 2019

Learning representations of microbe–metabolite interactions

Morton JT, Aksenov AA, Nothias LF, et al.

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Nature Communications 2019

Establishing microbial composition measurement standards with reference frames

Morton JT, Marotz C, Washburne A, et al.

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scikit-bio: Open Source Foundation

Our platform is built on scikit-bio, a DOE-funded open-source bioinformatics library trusted by researchers worldwide.

  • Global adoption: Used by leading research institutions
  • Peer-reviewed: Published in Nature journals
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Active Research Collaborations

National Institute of Allergy and Infectious Diseases (NIAID)

Multi-year collaboration developing microbiome-based biomarkers for infectious disease susceptibility and treatment response prediction.

NYU Langone Health

Joint research on multi-omics integration for cancer immunotherapy response prediction and patient stratification in oncology trials.

University of Calgary

Collaborative studies on microbiome-metabolome interactions in autoimmune diseases and therapeutic intervention optimization.

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